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Jan Voges - Compression of DNA Sequencing Data

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Jan Voges

Compression of DNA Sequencing Data

Series: Informatik/ Kommunikation

Volume 878 2022

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Entropy Coding of DNA Sequencing Data S. 91-111

„… context ofcompression of DNA sequencing data. First, we review the state of the artin Section 5.1. Here …” „… be able to analyze the performance of GABAC withrespect to the state of the art in DNA sequencing …” „… entropy coding of dna sequencing datavariable-length code words. Non-static entropy coding methods, suchas …”

Introduction S. 1-11

„… DNA sequencingwere developed. These were called high-throughput sequencing (HTS) ornext-generation …” „… https://www.genome.gov/sequencingcostsdata21.1 motivationinput: DNA library preparation sequencing output: readsFigure 1.2: DNA sequencing …” „… sequencing costs decreased rapidlyand significantly. Figure 1.3 shows the decrease in DNA sequencingcosts per …”

Conclusions S. 129-132

„… , transmission, and processing of theselarge volumes of DNA sequencing data are already comparable to the …” „… compression technologies that facilitate scalableDNA sequencing data storage, transmission, and processing.In …” „… dissertation. Thesefoundations span multiple disciplines that range from molecular biologyover DNA sequencing …”

Preliminaries S. 12-44

„… biological problems.142.2 dna sequencing2.2 dna sequencingDNA sequencing is the process of determining the …” „… disciplines. They range from molecular biologyin Section 2.1 and DNA sequencing in Section 2.2 over …” „… ofnucleotides in DNA is known as DNA sequencing. By sequencing DNA itis possible to determine the nucleotide …”

Titelei/Inhaltsverzeichnis

„… Fortschritt-Berichte VDICompression of DNA Sequencing DataDipl.-Ing. Jan VogesBAND 1|1VOLUME 1|1NR …” „… INFORMATIK/KOMMUNIKATIONVogesCompression of DNA Sequencing DataREIHE 10 | NR. 878ISBN 987-3-18-387810-9 E-ISBN 978-3-18-687810-6Institut …” „… _Reihe_10_878_Cover.pdf · Seite 222Compression of DNA Sequencing DataVon der Fakultät für Elektrotechnik …”

Bibliography S. 133-152

„… :10.1109/TCSVT.2003.815173.[MG77] A. M. Maxam and W. Gilbert. “A new method for sequencingDNA.” In …” „… , and E. Birney.“Efficient storage of high throughput DNA sequencing datausing reference-based …” „… framework for variation discoveryand genotyping using next-generation DNA sequencingdata.” In: Nature …”

Publications S. 153-166

„… _Reihe_10_878_Cover.pdf · Seite 222Fortschritt-Berichte VDICompression of DNA Sequencing DataDipl.-Ing …” „… INFORMATIK/KOMMUNIKATIONVogesCompression of DNA Sequencing DataREIHE 10 | NR. 878ISBN 987-3-18-387810-9 E-ISBN 978-3-18-687810-6Institut …” „… Genomic SequencingData.” In: Proceedings of the IEEE 109.9 (2021), pp. 1607–1622.doi: 10.1109/JPROC …”

Compression of Aligned Reads S. 45-60

„… generated with various sequenc-ing technologies such as sequencing by synthesis, SMRT sequencing,nanopore …” „… semiconductor sequencing.What is more, each item exhibits some special characteristics, makingthe entire set of …” „… that was used to generate item 3: SMRT sequencingtechnology. Reads produced using SMRT sequencing …”

doi.org/10.51202/9783186878106

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VDI nachrichten

Browse Volumes: VDI nachrichten

VDI nachrichten Volume 74 (2020) Issue 39 ISSN Online: 0042-1758

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Bettina Reckter Darmflora unter der Lupe S. 19

„… hatte die Geschäftsidee zum Test des Mikrobioms mithilfe moderner Sequencing-Technologie. Foto: Biomesr …” „… Die Next-Generation-Sequencing-Technologie, die das Erbgut sämtlicher Darmmikroben analysiert …” „… Technologieplattform entwickelt, mit der sich biologische DNA digitalisieren und analysieren lässt. Bei einem Treffen …”

doi.org/10.51202/0042-1758-2020-39

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VDI Wissensforum GmbH (ed.)

Automation 2021

Series: VDI-Berichte

Volume 2392 2021

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H. Tippe, A. Gahr, R. Möller Hygienische Qualitätsparameter für die Prozessautomation – Vom Labor zum Prozess S. 713-724

„… ), qPCR (quantitative Polymerase Chain Reaction), Genom- Sequencing, FISH (Fluoreszenz in-situ …” „… Nukleinsäuren eines ausgewählten DNA- oder RNA-Abschnittes (z. B. von SARS-CoV-2) inklusive deren …” „… Ziel-DNA bzw. -RNA aus einer Abwasserprobe in eine, für die qPCR-Methode geeignete Vorlage. Hohes …”

doi.org/10.51202/9783181023921

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wwt Wasserwirtschaft Wassertechnik

Browse Volumes: wwt Wasserwirtschaft Wassertechnik

wwt Volume 70 (2021) Issue 3 ISSN Online: 1438-5716

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Maximilian Werner, Alexander Merz, Stefan Krause Membranbasiertes Filtrationsverfahren zur weitergehenden Behandlung von gereinigtem Abwasser S. 27-32

„… ARB/ARG ARB/ARG (targeted metagenomic sequencing (orientierende Messung), TU Darmstadt) • Erreichbare …” „… mittels DNA-Analyse von der TU Darmstadt, Institut IWAR initiale Messungen zur Elimination von …”

doi.org/10.51202/1438-5716-2021-3

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VDI Wissensforum GmbH (ed.)

Automation 2020

Series: VDI-Berichte

Volume 2375 2020

doi.org/10.51202/9783181023754

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